| DICOM Convert |
brant_4D.nii |
| slice timing |
abrant_4D.nii |
| abrant_4D.mat |
| realign |
rabrant_4D.nii |
| meanabrant_4D.nii |
| rp_abrant_4D.txt |
| coregister |
wholebrain.nii |
| betStruchImg.nii |
| normalise |
wrabrant_4D.nii |
| denoise |
dGSRwrabrant_4D.nii |
| dnoGSRwrabrant_4D.nii |
| fdGSRwrabrant_4D.nii |
| fdnoGSRwrabrant_4D.nii |
| smooth |
s6fdGSRwrabrant_4D.nii |
| s6fdnoGSRwrabrant_4D.nii |
| Visual Check |
axial (folder) |
| coronal (folder) |
| ortho (folder) |
| sagital (folder) |
| Head Motion Est |
brant_headmotion_exclusions.txt |
| brant_headmotion_result.csv |
| Draw ROI |
brant_2_sphere_rois.nii/brant_2_cube_rois.nii |
| roi_info_sphere_2_rois.csv/roi_info_cube_2_rois.csv |
| ROI Calculation |
mean_ts(folder) |
| roi2roi_r_pearson_correlation (folder) |
| roi2roi_z_pearson_correlation (folder) |
| roi2wb_r_pearson_correlation (folder) |
| roi2wb_z_pearson_correlation (folder) |
| brant_roi_info.csv |
| roi_history.txt |
| T-Tests |
grp1_grp2_group_info.csv |
| group_info.mat |
| ttest2_diary.txt |
| ttest2_grp1_vs_grp2.mat |
| ttest2_grp1_vs_grp2_h_unc.txt |
| ttest2_grp1_vs_grp2_pval_left_unc.txt |
| ttest2_grp1_vs_grp2_pval_right_unc.txt |
| ttest2_grp1_vs_grp2_tval.txt |
| Network
Calculation |
*_corr_z_network.mat |
| Network
Statistics |
clustering_coeffecient_corr_ttest2_grp1_vs_grp2.png |
| clustering_coeffecient_spar_ttest2_grp1_vs_grp2.png |
| network_clustering_coeffecient.csv |
| network_clustering_coeffecient_ttest2_grp1_vs_grp2_stat.csv |
| readme.txt |