STEP 8: VisualizationΒΆ

  • Surface Mapping
    Click the VIEW button, then Surface Mapping. Select material, lighting and shading if necessary.
  • ROI Mapping
    Click ROI Mapping button in VIEW GUI. Select material, lighting and shading if necessary.
  • Network Visualization
    Click Network Visualization button in VIEW GUI. Open the node directories selection GUI and find the brant_roi_info.csv file where ROI Calculation in STEP 4 outputs. Open the edge directories selection GUI and find the ttest2_grp1_vs_grp2_h_unc.txt file where T-Tests in STEP 6 outputs.
  • Circos
    Click the Embedded button, then Circos. Select the circos’ directories as input or circos dir, e.g. D:/circos-0.69-5/bin. ROI info can use the example brant_circos_3mm_273.csv file in */Matlab/toolbox/brant-master/circos. Open the edge directories selection GUI and find the ttest2_grp1_vs_grp2_h_unc.txt file where T-Tests in STEP 6 outputs.
_images/step8_Surface_Mapping.png

fig.1 VIEW => Surface Mapping

_images/step8_ROI_Mapping.png

fig.2 VIEW => ROI Mapping

_images/surface_mapping_result.png

fig.3 Result of Surface Mapping

_images/step8_ROI_Mapping_Result.png

fig.4 Result of ROI Mapping

_images/step8_Network_Visualization.png

fig.5 VIEW => Network Visualization

_images/step8_Network_Visualization_Result.png

fig.6 Result of Network Visualization

_images/step8_circos.png

fig.8 Embedded => Circos

_images/circos_result.png

fig.8 Result of Circos