roi file: ROIs in one nifti file
roi index(*): optional. labels of tagged ROIs in a .csv file. For example:
1,SFG 2,MFG 3,IFG
clustersize thr: threshold of cluster size.
mask: could be whole brain mask or gray matter mask.
id index: identifier to find unique string for each subject
filetype: files in the filetype will be searched in input directories.
4D nifti files: if the input data is 4D, check this item. Otherwise uncheck.
input dirs: directories can be input either using a .txt file or spm select window.
extract mean: extract mean time series for each ROI
roi to roi correlation: calculate correlation between pairs of ROI
roi to whole brain correlation: calculate correlation between each ROI’s mean time series and voxels in the mask.
Partial correlation: (check to use Partial correlation, uncheck to use Pearson’s correlation) when calculating correlation, between one roi mean time series and voxels/other time series, the rest of roi mean time serieses will be regressed out from the calculation.
out dir: output directory for saving results.
- S: Save parameters of the current panel to a *.mat file. The *.mat can be further loaded for the panel or be used in a script processing.
- L: Load parameters from *.mat for the current panel.
- ?: Help information.