Merge/Extract ROIsΒΆ

  • Operation: select to merge 3D rois into one, or extract ROIs from an atlas.
  • Merge:
  • filetype: files in the filetype will be searched in input directories.
  • data dir: directory in which stores 3D rois.
  • out fn: output filename
  • out dir: output directory
  • Extract:
  • roi file: ROIs in one nifti file

  • roi info*: (* means optional) labels of tagged ROIs in a .csv file. For example:

  • roi index: a vector of integers. used for selecting wanted ROIs.

  • output to single file: choose to output to only one file.

  • out dir: output directory

  • Buttons:
    • S: Save parameters of the current panel to a *.mat file. The *.mat can be further loaded for the panel or be used in a script processing.
    • L: Load parameters from *.mat for the current panel.
    • ?: Help information.